Hermaphrodite

Anime & Manga

 * In Astra Lost in Space, Luca is eventually revealed to be intersex. He identifies as male though, and everyone respects and treats him as his gender.
 * Daily Life with Monster Girl has Licchii, a member of a Leech-based extraspecies. Like real leeches, Licchii has fully functional sexual organs for both sexes.
 * Interspecies Reviewers has Crimvael "Crim", who is an angel with both sets of genitalia though he identifies as "male" for convenience (and in part because he doesn't want his friends to get any weird ideas if they learn about his female parts). At one point he drinks a Gender Bender potion and while his male friends all turn into women, he just loses his penis for the duration. He also doesn't mind being the one to give or take it in bed. As he's the only angel to show up physically, however, it's unclear if he's just a unique case or if all angels follow this pattern. Episode 3, reveals that hyena girls, like their real-world counterparts, downplay this trope by having pseudo-phalluses.

Western Animation

 * In Steven Universe, Stevonnie is a fusion between the half-human boy Steven and the full human girl Connie. They are non-binary and use they/them pronouns, and their fused body is canonically intersex. Appearance-wise Stevonnie is androgynous, and while generally leaning feminine (most notably having a female voice actor), after they began growing facial hair after being fused for just a few days.